AI/TLDR

MONAI

PyTorch-based deep learning framework for healthcare imaging

Overview

MONAI is a PyTorch-based, open-source framework for deep learning in healthcare imaging, and it is part of the PyTorch Ecosystem. It gives medical imaging researchers and engineers building blocks for working with multidimensional scans instead of writing that plumbing from scratch.

The framework focuses on the parts of a workflow that are specific to medical data. It provides flexible preprocessing for multidimensional medical imaging data, domain-specific implementations of networks, losses, and evaluation metrics, and compositional, portable APIs that fit into existing PyTorch workflows.

MONAI is built to scale and to be shared. It supports multi-GPU and multi-node data parallelism for larger training runs, and it has a separate Model Zoo that uses the MONAI Bundle format so the community can package and reuse trained models.

What it does

  • Flexible preprocessing for multidimensional medical imaging data
  • Compositional and portable APIs that integrate into existing PyTorch workflows
  • Domain-specific implementations of networks, losses, and evaluation metrics
  • Customizable design that suits varying levels of user expertise
  • Multi-GPU and multi-node data parallelism support
  • Model Zoo using the MONAI Bundle format for sharing community models

Getting started

Install MONAI from PyPI with pip, then import it in Python to use its transforms, networks, and metrics.

Install MONAI

Install the framework from PyPI. Other installation options, including Docker Hub and conda-forge, are described in the installation guide.

bashbash
pip install monai

Import MONAI in Python

Import the package to confirm the install and to access its modules.

pythonpython
import monai

print(monai.__version__)

Follow the tutorials

Work through the interactive tutorials, such as the MedNIST demo and MONAI for PyTorch Users, which run on Google Colab. The example notebooks live in the Project-MONAI/tutorials repository.

bashbash
git clone https://github.com/Project-MONAI/tutorials

Commands and code are distilled from the project's own documentation — always check the official repo for the latest.

When to use it

  • Preprocess multidimensional medical imaging data for a training pipeline
  • Train and evaluate models using domain-specific networks, losses, and metrics
  • Scale training across multiple GPUs or nodes with data parallelism
  • Package and share trained models through the Model Zoo using the MONAI Bundle format

How MONAI compares

MONAI alongside other open-source medical imaging tools AI/TLDR tracks, ranked by GitHub stars.

ToolStarsWhat it does
nnU-Net★ 8.7kSelf-configuring deep-learning framework that automatically adapts U-Net pipelines to any biomedical image segmentation dataset.
MONAI★ 8.4kPyTorch-based deep learning framework for healthcare imaging
MedSAM★ 4.3kSegment Anything foundation model adapted for promptable segmentation across diverse medical imaging modalities.
TotalSegmentator★ 2.9kTool for robust automatic segmentation of over 100 anatomical structures in CT and MR images.
NeuroVFM★ 46Neuroimaging visual foundation model trained on 5.24M clinical MRI/CT volumes via self-supervised Vol-JEPA, covering 156 diagnostic tasks across both modalities.